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    Home » Recipes » Desserts

    Gluten Free Mini Chocolate Chips Muffins Bites

    Published: Apr 25, 2024 by Nicole Spiridakis ·

    Jump to Recipe Print Recipe

    Easy gluten free mini chocolate chips muffins bites are tender and moist, perfect for packing in lunches and more. Inspired by a favorite store-bought snack, you'll love making these delectable little morsels easily at home!

    Mini chocolate chips are tossed next to mini chocolate chip muffins.

    Chocolate Chip Mini Muffins

    These little gluten free mini chocolate chips muffins are inspired by the Entemann's "Little Bites" muffins but are gluten free and packed with real ingredients. Plus, if you make them at home they're a zero waste snack (something we've been focussing on lately in our house). My girls love these muffins and I love to tuck them into their lunchboxes for a little sweet treat that's not overly sugared. You can even use maple syrup instead of the sugar if you want to go lighter on the sweetness, and whole grain oat flour packs a protein punch you won't get from all-purpose flour.

    Lots to Love

    I regularly make mini banana muffins with or without chocolate, and they are regularly gobbled up for an after-school snack. These mini chocolate chips muffins are similar to our favorite banana mini muffins but without the bananas! You'll love the texture and whole foods ingredients in this recipe, too.

    • Just sweet enough - I've included ½ cup of sugar in this recipe but you could easily drop it to ⅓ with similarly great results.
    • Wholesome ingredients - A quick scan of the ingredients list will show you that there's nothing weird or processed in these little muffins. I am such a fan of baking from scratch, not only because it tastes so much better but also because you can eliminate any strange ingredients.
    • Bite-sized - These little muffins remind me of those "two bite" cupcakes from Whole Foods - my kids LOVE mini things and these muffins are no exception.
    The ingredients for gluten free mini chocolate chips muffins are labelled and portioned out: mini choco chips, oat flour, greek yogurt, eggs, sugar, butter, baking powder, baking soda, salt.

    Ingredients You Need

    Here's a quick look at what you'll need on hand to make these muffins. The full ingredient amounts are included in the recipe card at the end of this post - this is just an overview.

    • Oat flour - Naturally gluten free oat flour is an easy and reliable choice to make these muffins. Feel free to use a gluten free flour blend if you prefer.
    • Leavening agents - Baking powder and baking soda work together to give the muffins a bit of lift. Note that they will not rise as much as other muffins and will have a slightly flatter appearance (this is normal!)
    • Salt - I always use fine sea salt in my recipes!
    • Greek yogurt - Any variety - non-fat, low-fat or regular - of Greek yogurt will work well. Make sure to use plain or vanilla yogurt.
    • Granulated sugar - Reduce the amount of sugar to ⅓ cup if you wish. Substitute maple syrup or brown sugar.
    • Butter - Use unsalted butter.
    • Eggs - Most baking recipes are written with large eggs in mind unless otherwise specified, so you will use large eggs in this recipe.
    • Mini chocolate chips - I really prefer mini choco chips so that they don't overwhelm the muffins with chocolate, so try to use minis if you can.
    A dozen mini chocolate chips muffins on a white background.

    How to Make These Gluten Free Mini Muffins

    Check out the photos to guide you through making these mini chocolate chip muffins! See the recipe card for detailed instructions.

    The dry mix is whisked next to the wet mix.
    whisk
    The wet and dry ingredients are combined in a bowl.
    combine
    • Prep: Grease a 24-cup mini muffin pan.
    • Make dry and wet mix: Whisk together the flour, sugar baking powder, baking soda, and salt. In another bowl, stir together the yogurt, eggs, and butter.
    • Combine: Stir the yogurt mixture into the flour mixture.
    Mini chocolate chips are folded into the batter.
    mix
    The batter for gluten free mini chocolate chips muffins.
    add chocolate
    • Add chocolate: Fold in the chocolate chips.
    A mini muffin tin full of batter.
    place in tin
    Two dozen gluten free mini chocolate chips muffins cool on a rack.
    bake and cool
    • Add to tin: Divide batter among the prepared muffin tin and preheat the oven.
    • Rest and bake: Let the batter rest while the oven preheats, then bake the muffins for 12-15 minutes.
    • Cool: Cool in the pan for 2 minutes, then gently remove to a rack to cool fully.
    A white bowl of mini chocolate chips with mini chocolate chips muffins next it.

    Best Tips for Sucess

    • Sweetener options: Use maple syrup or coconut sugar to make these muffins refined sugar-free.
    • Flour substitutions: Swap a 1:1 gluten free all purpose flour (use 140 grams) for the oat flour, or try sorghum flour.
    • Make dairy-free: Substitute a non-dairy Greek yogurt for the yogurt and use coconut or vegetable oil for the butter.
    • Liners or not: Sadly, using cupcake liners can result in muffins that stick to the liners (though they still taste delicious). However, even well-greasing the muffin tin can result in sticking. So, you do you.
    A handful of mini chocolate chips next to mini chocolate chip muffins.

    How to Store

    You have a few options for storing these gluten free mini chocolate chips muffins, as outlined below:

    • Counter - Cool the muffins and place them in an airtight container to keep on the counter for up to 3 days.
    • Fridge - Place cooled muffins in an airtight container and store them in the fridge for up to 5 days. You can serve them cold or at room temperature.
    • Freezer - Place muffins in a sealable, freezer-safe bag and store them in the fridge for up to 3 months. Thaw the muffins in the fridge before eating.

    More Gluten Free Muffin Recipes

    • Gluten-Free Lemon Poppyseed Muffins
    • Oat Flour Banana Muffins
    • Oat Flour Blackberry Muffins
    A dozen mini chocolate chips muffins on a white background.
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    Gluten Free Mini Chocolate Chips Muffins

    Nicole Spiridakis
    Easy gluten free mini chocolate chips muffins bites are tender and moist, perfect for packing in lunches and more. Inspired by a favorite store-bought snack, you'll love making these delectable little morsels easily at home!
    5 from 1 vote
    Print Recipe Pin Recipe
    Prep Time 5 minutes mins
    Cook Time 13 minutes mins
    Total Time 18 minutes mins
    Course Breakfast
    Cuisine American
    Servings 24
    Calories 92 kcal

    Ingredients
     
     

    • 1 ¼ cup oat flour (140 grams), or use all-purpose flour or a gluten free flour blend
    • 1 teaspoon baking powder
    • ½ teaspoon baking soda
    • ¼ teaspoon salt
    • 1 cup plain Greek yogurt
    • ½ cup sugar
    • ¼ cup unsalted butter, melted and slightly cooled
    • 2 eggs, lightly beaten
    • ¾ cup mini chocolate chips

    Instructions
     

    • Grease or line a 24-cup mini muffin pan with liners.
    • In a medium bowl, whisk together the flour, sugar baking powder, baking soda, and salt.
    • In another bowl, stir together the yogurt, eggs, and butter.
    • Stir the yogurt mixture into the flour mixture, then fold in the chocolate chips.
    • Divide batter among the prepared muffin tin, filling about to the edge. Preheat the oven to 375℉.
    • Let the batter rest while the oven preheats, then bake the muffins for 12-15 minutes, until the tops are set and a cake tester inserted into the center comes out clean.
    • Remove the muffins from the oven and let cool in the pan for 2 minutes. Run a thin knife around the edges to loosen, if needed, then transfer the muffins to a wire rack to cool fully.

    Nutrition

    Calories: 92kcalCarbohydrates: 12gProtein: 2gFat: 4gSaturated Fat: 2gPolyunsaturated Fat: 0.3gMonounsaturated Fat: 1gTrans Fat: 0.1gCholesterol: 20mgSodium: 78mgPotassium: 36mgFiber: 0.5gSugar: 8gVitamin A: 92IUVitamin C: 0.03mgCalcium: 31mgIron: 0.4mg
    Disclaimer: Nutrition information is automatically calculated and is an estimate (I'm not a nutritionist and can't guarantee accuracy!). Even when not specified, be sure to check that all the ingredients you use are gluten free if you need them to be by reading labels on all packaging and/or confirming with the manufacturer.
    Did you make this recipe?Let me know in the comments how it went!

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    5 from 1 vote (1 rating without comment)

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    Welcome!

    Cucina Nicolina is your home for easy gluten free baking recipes made with simple, wholesome ingredients. I'm a writer, recipe developer, and cookbook author who loves to share all things yummy and gluten free. Learn more about me.

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