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    Home » Recipes » Gluten Free Muffins & Scones

    Gluten-Free Mini Blueberry Muffins

    Modified: Jan 26, 2026 · Published: May 21, 2013 by Nicole Spiridakis

    Jump to Recipe Print Recipe

    Little two-bite, gluten-free mini blueberry muffins are made with whole-grain oat flour, Greek yogurt, and plenty of juicy berries! They bake up soft and tender, making them a nice, wholesome option for kids' snacks, lunchboxes, and quick breakfasts. Easy to make ahead, too!

    A plate full of gluten free mini blueberry muffins.

    It's safe to say that I love baking for my girls, and I'm always looking for ways to up the after-school snack game. These mini blueberry muffins are a worthy contender, along with gluten free banana mini muffins and the winning duo of gluten free banana blueberry muffins!

    These gluten free mini muffins are a game-changer: made with minimal sugar and packed with whole grain oat flour and tangy Greek yogurt. Fresh or frozen berries add juicy flavor, and a heaping ½-teaspoon of cinnamon. Perfect on the kitchen counter for a grab-and-go bite, or add them to lunchboxes.

    Jump to:
    • Why These Gluten-Free Mini Muffins Work
    • What You'll Love
    • Ingredients Needed
    • Step-by-Step Instructions
    • Tips & Recipe Notes
    • Proper Storage
    • More Gluten Free Blueberry Recipes
    • Recipe

    Why These Gluten-Free Mini Muffins Work

    Thanks to gluten-free, whole grain oat flour (if you're wondering, is oat flour gluten-free?, it is!), these muffins are wonderfully textured and sturdy enough for small hands. And, unlike muffins made with a gluten-free flour mix, they are nicely moist without a hint of grittiness or dryness.

    What You'll Love

    Here's a look at why you're sure to enjoy these mini blueberry muffins! For a larger version, check out my gluten-free blueberry muffins recipe.

    • Lovely texture. Soft but not overly so (for a cake-like muffin, make my gluten-free bakery-style blueberry muffins), these muffins are never dry.
    • Just one gluten-free flour is needed. Gluten-free powerhouse flour oat flour stars here, and is the only flour needed!
    • Quick and wholesome. This is not a one-bowl recipe, but it comes together almost as fast as if it were! I also love that there's a bit less sugar than other muffins and is full of whole-grain flour.
    Ingredients for gluten free mini blueberry muffins are text-labeled.

    Ingredients Needed

    Check out the short ingredients list for these muffins below. Make sure to scroll down to my recipe card at the bottom of this post for the full ingredient amounts and instructions.

    • Oat flour - You can pick up a package of oat flour (certified gluten-free if needed) at the grocery store or learn how to make oat flour super easily. If you can't eat oats, brown rice flour is a nice alternative.
    • Granulated sugar
    • Rising agents - A combination of (fresh!) baking powder and baking soda.
    • Cinnamon
    • Salt - I used fine sea salt, and table salt also works.
    • Greek yogurt - I love using whole-fat Greek yogurt here, but low or non-fat yogurt works, too. Or swap plain regular yogurt.
    • Oil - Your choice of oil, like vegetable, canola, coconut, etc.
    • Eggs - Large or medium-sized eggs are best.
    • Blueberries - Fresh or frozen fruit is fine.
    Gluten free mini blueberry muffins piled on a plate.

    Step-by-Step Instructions

    Here's a look at how to make these muffins:

    The flour mix for gluten free mini blueberry muffins in a bowl.

    1. Mix dry ingredients: In a big bowl, whisk together the dry ingredients. Separately, mix the wet ingredients.

    The wet and dry mixes for gluten free mini blueberry muffins combined in a bowl.

    2. Make batter: Combine the two mixes (it will be a thick batter), then fold in the blueberries.

    Gluten free mini blueberry muffin batter in a muffin tin.

    3. Portion batter: Divide the batter into a greased mini muffin tin.

    A mini muffin tin with gluten free mini blueberry muffins cools.

    4. Bake: Place in a 375 F oven and bake for about 15 minutes.

    Tips & Recipe Notes

    • What kind of blueberries? You can use fresh or frozen berries, and if you can get some smaller wild blueberries, they are also perfect for smaller pops of fruit flavor.
    • Fold in the berries gently. Especially important if using frozen berries! Gently fold in the berries so that they don't turn the batter blue (unless you want this so in that case - go ahead!).
    • Grease the pan well. I advise using non-stick spray or well-greasing the muffin tin so that the muffins release easily.
    • Don't overbake. This can lead to sticking or dryness, so check at 15 minutes for doneness.
    • Make regular-sized. Feel free to make these muffins in a regular-sized muffin tin for larger muffins. Adjust the baking time if needed - they may need about 5 additional minutes.
    • Add lemon zest. I always love the combination of lemon and blueberry! Stir in the zest of 1 lemon for a bit of bright, citrusy flavor.
    • Make it dairy-free. Swap the yogurt for a dairy-free yogurt of your choice.
    A mini blueberry muffin split in half on a plate next to a plate of muffins and a cup of coffee.

    Proper Storage

    For the best overall texture, muffins should be cooled fully so that they don't get soggy in the storage container. Then, do this:

    • Counter - Place muffins in an airtight container and store them on the counter for up to 3 days.
    • Fridge - Place the container in the fridge for up to 5 days.
    • Freezer - Transfer muffins to a freezer-safe bag or container and store in the freezer for up to 3 months. Thaw in the fridge before serving.

    More Gluten Free Blueberry Recipes

    • A plate of four gluten free blueberry scones.
      Gluten Free Blueberry Scones with Lemon
    • Slices of gluten free blueberry banana bread surrounded by blueberries.
      Gluten Free Blueberry Banana Bread
    • A slice of gluten free blueberry bread is served on a white plate with the loaf in the background.
      Gluten Free Blueberry Bread
    • A piece of blueberry coffee cake on a plate.
      Gluten Free Blueberry Coffee Cake

    Happy baking! If you make this recipe, I'd love to know. Please leave a comment below, reach out with any questions, and tag me on Instagram @Cucina Nicolina  ❤️

    Recipe

    A plate full of gluten free mini blueberry muffins.
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    Gluten Free Mini Blueberry Muffins

    Nicole Spiridakis
    Two-bite, gluten-free mini blueberry muffins are made with whole-grain oat flour, Greek yogurt, and plenty of juicy berries.
    No ratings yet
    Print Recipe Pin Recipe
    Prep Time 5 minutes mins
    Cook Time 15 minutes mins
    Total Time 20 minutes mins
    Course Breakfast
    Cuisine American
    Servings 24 muffins
    Calories 72 kcal

    Ingredients
     
     

    • 1 ¼ cups oat flour (140 grams)
    • ½ cup granulated sugar
    • 1 teaspoon baking powder
    • ½ teaspoon baking soda
    • ½ teaspoon ground cinnamon
    • ¼ teaspoon salt
    • ¾ cup plain Greek yogurt
    • ¼ cup oil vegetable, canola, coconut, etc.
    • 2 large eggs
    • ½ cup blueberries fresh or frozen

    Instructions
     

    • Grease a 24-cup mini muffin pan with nonstick spray or oil.
    • In a medium bowl, stir together the 1 ¼ cups oat flour, ½ cup granulated sugar, 1 teaspoon baking powder, ½ teaspoon baking soda, ½ teaspoon ground cinnamon, and ¼ teaspoon salt.
    • In another bowl, stir together the ¾ cup plain Greek yogurt, ¼ cup oil, and 2 large eggs.
    • Gently stir the yogurt mixture into the flour mixture, then fold in the ½ cup blueberries.
    • Preheat the oven to 375℉. Divide batter among the prepared muffin tin, filling about to the edge. Rest the batter while the oven heats.
    • Place in the oven and bake for 12-14 minutes, or until the edges are lightly golden brown and a tester inserted into the center comes out cleanly.
    • Remove from oven, and let cool in the pan for 2 minutes. Run a paring knife around the edges to loosen, if needed, then carefully transfer muffins to a wire rack to cool fully.

    Notes

    • What kind of blueberries? You can use fresh or frozen berries, and if you can get some smaller wild blueberries, they are also perfect for smaller pops of fruit flavor.
    • Fold in the berries gently. Especially important if using frozen berries! Gently fold in the berries so that they don't turn the batter blue (unless you want this so in that case - go ahead!).
    • Grease the pan well. I advise using non-stick spray or well-greasing the muffin tin so that the muffins release easily.
    • Don't overbake. This can lead to sticking or dryness, so check at 15 minutes for doneness.
    • Make regular-sized. Feel free to make these muffins in a regular-sized muffin tin for larger muffins. Adjust the baking time if needed - they may need about 5 additional minutes.
    • Add lemon zest. I always love the combination of lemon and blueberry! Stir in the zest of 1 lemon for a bit of bright, citrusy flavor.

    Nutrition

    Calories: 72kcalCarbohydrates: 9gProtein: 2gFat: 3gSaturated Fat: 1gPolyunsaturated Fat: 2gMonounsaturated Fat: 1gTrans Fat: 0.02gCholesterol: 17mgSodium: 69mgPotassium: 36mgFiber: 0.5gSugar: 5gVitamin A: 24IUVitamin C: 0.3mgCalcium: 22mgIron: 0.3mg
    Disclaimer: Nutrition information is automatically calculated and is an estimate (I'm not a nutritionist and can't guarantee accuracy!). Even when not specified, be sure to check that all the ingredients you use are gluten free if you need them to be by reading labels on all packaging and/or confirming with the manufacturer.
    Did you make this recipe?Let me know in the comments how it went!

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    Comments

    1. sizzle says

      May 21, 2013 at 8:51 am

      Can't wait to make these!

      Reply

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    Welcome!

    I'm Nicole, and I share carefully tested gluten-free baking recipes made with simple, wholesome ingredients. I'm a writer, recipe developer, and cookbook author who believes in real food, lots of vegetables, and balance, too -- because I dearly love cake. I post gluten-free baking recipes as well as the occasional vegetarian and vegan dish. Welcome! Learn more about me.


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    My cookbook, Flourless, was published by Chronicle Books and is full of naturally gluten-free desserts to tempt everyone! Learn more.

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