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    Home » Recipes » Gluten Free Cookies & Bars

    Soft Baked Gluten Free Pumpkin Chocolate Chip Cookies (made with oat flour!)

    Modified: Oct 13, 2025 · Published: Oct 7, 2022 by Nicole Spiridakis

    Jump to Recipe Print Recipe

    Soft and chocolatey, these gluten free pumpkin chocolate chip cookies are a fall staple in my kitchen, made with warming spices, smooth pumpkin puree, and plenty of semisweet chocolate.

    A pile of gluten free pumpkin chocolate chip cookies on a white plate.

    Welcome fall with a plate of gluten free pumpkin chocolate chip cookies, an annual favorite I first started baking during my San Francisco days. Over the years, they've stood the test of time, and I indulge in them every October. Soft and cakey, these cookies were made to snack on a cookie with a cup of coffee on a crisp, blue-skied morning.

    I love that these tender cookies are not too sweet - the pumpkin brings natural sweetness and moisture, which plays beautifully off the oat flour. Plenty of butter adds richness, and the warming spices feel just right for the season. While they are lovely plain if you want to go that route, I will always advocate for adding a heaping helping of melty chocolate chips! Pair them with a batch of gluten free pumpkin blondies or slices of gluten free pumpkin bread.

    Jump to:
    • Cookie Highlights
    • Ingredients Needed
    • Variations to Try
    • Step-by-Step Instructions
    • Baking Tip: Chill the Dough
    • Tips & Recipe Notes
    • Storage Options
    • More Gluten Free Pumpkin Recipes
    • Recipe

    Cookie Highlights

    I make these pumpkin chocolate chip cookies each time fall descends, especially around Halloween and Thanksgiving. Soft and not-too-sweet, pumpkin-y but not overly so, with hints of brown sugar and caramel, these little morsels are packed with bittersweet chocolate. Serve a plate with gluten free pumpkin pie at Thanksgiving, or enjoy cookies as an after-school snack.

    • Beautiful texture. These cookies are marvelously soft and cakey, and I love them for that! For a chewier pumpkin cookie, try my gluten free chewy pumpkin cookies.
    • Effortlessly cozy.  You'll find all the familiar fall spices here to complement the pumpkin, and you can also swap in a pumpkin pie spice blend to make them even more autumnal.
    • A little different. This is not your ordinary chocolate chip cookie recipe! The pumpkin puree keeps these cookies moist and soft for days.

    If you loved this recipe, you'll find even more ways to bake with oat flour on my oat flour recipes page.

    The ingredients for gluten free pumpkin chocolate chip cookies are text-labeled.

    Ingredients Needed

    I've outlined what you'll need for these cookies below. Make sure to scroll down to my recipe card at the bottom of this post for the full ingredient amounts and instructions!

    • Oat flour - Whole grain, gluten-free oat flour is a great choice for cookies, adding a touch of natural sweetness and flavor. If you don't eat oats, try brown rice flour or a 1:1 gluten-free flour blend of your choice (or my homemade gluten free flour blend).
    • Rising agents - Baking soda and baking powder.
    • Salt - Use fine sea salt or table salt.
    • Spices - Ground cinnamon and ginger add warmth.
    • Butter - I always use unsalted butter brought to soft room temperature.
    • Sugars - A combo of light or dark brown sugar and granulated sugar.
    • Pumpkin - Use homemade pumpkin puree or a can of pure pumpkin puree here, rather than pumpkin pie filling, which is already sweetened and spiced.
    • Eggs - Use large or medium-sized eggs.
    • Vanilla - A little pure vanilla extract or vanilla bean paste adds extra flavor.
    • Chocolate chips - I love semisweet chocolate chips in these cookies!

    Variations to Try

    • Nuts - Try 1 cup chopped walnuts or pecans instead of 1 cup of the chocolate chips.
    • Different chocolate - You can swap in a different kind of chocolate chip, including milk chocolate or even white chocolate, for a different flavor note.
    • Candy - Go super decadent and swap the chocolate for mini M&M's or chopped candy bits.
    • Pumpkin pie spice - Substitute 2 teaspoons of pumpkin pie spice blend for the combo of cinnamon and ginger.
    Mini pumpkins and a plate of gluten free pumpkin chocolate chip cookies.

    Step-by-Step Instructions

    Here's an overview in photos of how to make these soft and sweet pumpkin cookies:

    Flour mix for pumpkin chocolate chip cookies in a bowl.

    1. Make dry mix: In a bowl, whisk together the oat flour, baking powder, baking soda, salt, and spices.

    Pumpkin mixed with butter in a bowl.

    2. Cream butter: In a large bowl, cream the butter and sugars, then add the eggs and pumpkin puree.

    The batter for gluten free pumpkin chocolate chip cookies in a bowl.

    3. Combine: Beat the dry mix into the wet ingredients.

    Chocolate chips mixed into gluten free pumpkin chocolate chip cookie dough.

    4. Add chips: Now beat or stir in the chocolate chips and place the dough to rest in the fridge.

    Portioning out gluten free pumpkin chocolate chip cookies on a baking sheet.

    5. Form cookies: Line 2 baking sheets with parchment and form the cookies into balls.

    Baked gluten free pumpkin chocolate chip cookies on a baking sheet.

    6. Bake: Place in a 375°F oven and bake for about 20 minutes.

    Baking Tip: Chill the Dough

    If you can, plan ahead and place the dough in an airtight container in the fridge for at least 24 hours. This will help the flour to hydrate and also let the dough "season" - meaning it will result in more flavorful cookies when baked.

    If you don't have a ton of time, let the dough rest in the fridge for 30-60 minutes so that it firms up a bit.

    A plate of gluten free pumpkin chocolate chip cookies, milk, and coffee.

    Tips & Recipe Notes

    • What size? I like smaller, more bite-sized cookies, but you can make them any size you prefer. If you make larger cookies, make sure to keep enough space between them on the baking sheet.
    • Press down the dough. I personally prefer the cake-like appearance of these cookies, but for a flatter vibe, gently press down on each ball of dough before baking.
    • Bake them longer. I like the softer texture of these cookies (irresistible, really), but for a firmer, more chewy cookie, add a few more minutes of baking time.
    • Swap gluten free flour. If oat flour is not your thing, substitute it for a 1:1 all-purpose gluten-free flour blend by weight.
    • Try browning the butter. For extra depth of flavor! Instead of creaming the butter and sugar, brown it first. Here's a quick way to brown butter: Place it in a pot set over medium heat, then melt the butter, stirring occasionally. Let it cook a few minutes longer after it melts, swirling the pan if needed, until it's brown and has a nutty aroma. Cool the butter slightly, then proceed with the recipe. Feel free to use a whisk rather than a mixer if the butter is melted.
    • Make ice cream sandwiches!  These pumpkin chocolate cookies are lovely when made into ice cream sandwiches! Fill them with no churn pumpkin ice cream or vegan chocolate sorbet for a treat.
    A cup of coffee and two pumpkin chocolate chip cookies on a plate.

    Storage Options

    Make sure to cool the cookies completely before popping them into a storage container - I find that if they are slightly warm when I do this, the cookies will get soggy.

    • Counter - Place the cookies in an airtight container or sealable bag and store them on the counter for up to 3 days.
    • Fridge - Store the cookies in their storage container in the fridge for up to 5 days.
    • Freezer - Add the cookies to a freezer-safe bag and store them in the freezer for up to 3 months. Thaw the cookies in the fridge before serving.

    More Gluten Free Pumpkin Recipes

    • A bite of pumpkin coffee cake on a fork.
      Gluten Free Pumpkin Coffee Cake
    • Chocolate chip oat flour pumpkin muffins on a white plate.
      Oat Flour Pumpkin Muffins
    • A plate of gluten free pumpkin chocolate chip muffins and a cup of coffee.
      Gluten Free Pumpkin Chocolate Chip Muffins
    • Pieces of gluten free pumpkin chocolate chip cake on a plate.
      Gluten Free Pumpkin Chocolate Chip Cake

    Happy baking! If you make this recipe, I'd love to know. Please leave a comment below, reach out with any questions, and tag me on Instagram @Cucina Nicolina  ❤️

    Recipe

    A pile of gluten free pumpkin chocolate chip cookies on a white plate on a napkin.
    Prevent your screen from going dark

    Gluten Free Pumpkin Chocolate Chip Cookies

    Nicole Spiridakis
    These cookies are soft and cakey, with just the right balance of pumpkin to chocolate. You could also try adding fresh grated ginger for an extra flavor punch.
    5 from 2 votes
    Print Recipe Pin Recipe
    Prep Time 15 minutes mins
    Cook Time 15 minutes mins
    Resting Time 20 minutes mins
    Total Time 50 minutes mins
    Course Dessert
    Cuisine American
    Servings 24 cookies
    Calories 245 kcal

    Ingredients
      

    • 2 ¼ cups oat flour or gluten-free 1:1 flour (270 grams)
    • 1 teaspoon baking powder
    • ½ teaspoon baking soda
    • ½ teaspoon fine sea salt
    • 1 ½ teaspoons cinnamon
    • ½ teaspoon ginger
    • 16 tablespoons unsalted butter at soft room temperature
    • ½ cup light or dark brown sugar
    • ½ cup granulated sugar
    • 2 cups pumpkin puree or one 15-ounce can of pumpkin purée
    • 2 large eggs
    • 1 teaspoon pure vanilla extract
    • 2 cups semisweet chocolate chips

    Instructions
     

    • In a medium bowl, whisk together 2 ¼ cups oat flour, 1 teaspoon baking powder, ½ teaspoon baking soda, ½ teaspoon fine sea salt, 1 ½ teaspoons cinnamon, ½ teaspoon ginger.
    • In a large bowl, using a mixer on medium speed, cream the 16 tablespoons unsalted butter with the ½ cup light or dark brown sugar and ½ cup granulated sugar. Beat in the 2 cups pumpkin puree 2 large eggs, and 1 teaspoon pure vanilla extract until well incorporated. Add the flour mixture on low speed and until incorporated. Fold in the 2 cups semisweet chocolate chips.
    • Cover the bowl with a piece of plastic wrap and place in the fridge for 1 hour and up to 48 hours (I did 24 hours). Then, preheat the oven to 350℉. Line 2 a baking sheets with parchment paper.
    • Using a tablespoon measure, scoop out balls of dough, roll into a smooth ball, and place about 1 inch apart on the baking sheet. Use the palm of your hand to gently flatten each cookie, then place the baking sheet in the oven and bake cookies for 15-16 minutes. Remove from oven and place on a wire rack to cool. Repeat with the remaining batter. 

    Notes

    • Chill the dough. If you can, plan ahead and place the dough in an airtight container in the fridge for at least 24 hours. This will help the flour to hydrate and also let the dough "season" - meaning it will result in more flavorful cookies when baked. Or, let the dough rest in the fridge for 30-60 minutes so that it firms up a bit.
    • What size? I like smaller, more bite-sized cookies, but you can make them any size you prefer. If you make larger cookies, make sure to keep enough space between them on the baking sheet.
    • Press down the dough. I personally prefer the cake-like appearance of these cookies, but for a flatter vibe, gently press down on each ball of dough before baking.
    • Bake them longer. I like the softer texture of these cookies (irresistible, really), but for a firmer, more chewy cookie, add a few more minutes of baking time.
    • Swap gluten free flour. If oat flour is not your thing, substitute it for a 1:1 all-purpose gluten-free flour blend by weight.
    • Try browning the butter. For extra depth of flavor! Instead of creaming the butter and sugar, brown it first. Here's a quick way to brown butter: Place it in a pot set over medium heat, then melt the butter, stirring occasionally. Let it cook a few minutes longer after it melts, swirling the pan if needed, until it's brown and has a nutty aroma. Cool the butter slightly, then proceed with the recipe. Feel free to use a whisk rather than a mixer if the butter is melted.
    • Make ice cream sandwiches!  These pumpkin chocolate cookies are lovely when made into ice cream sandwiches! Fill them with no churn pumpkin ice cream or vegan chocolate sorbet for a treat.

    Nutrition

    Serving: 1 cookieCalories: 245kcalCarbohydrates: 26gProtein: 3gFat: 15gSaturated Fat: 8gPolyunsaturated Fat: 1gMonounsaturated Fat: 4gTrans Fat: 0.3gCholesterol: 37mgSodium: 97mgPotassium: 180mgFiber: 3gSugar: 15gVitamin A: 3440IUVitamin C: 1mgCalcium: 40mgIron: 2mg
    Disclaimer: Nutrition information is automatically calculated and is an estimate (I'm not a nutritionist and can't guarantee accuracy!). Even when not specified, be sure to check that all the ingredients you use are gluten free if you need them to be by reading labels on all packaging and/or confirming with the manufacturer.
    Did you make this recipe?Let me know in the comments how it went!

    More Gluten Free Cookies & Bars

    • A fork cuts into a slice of chocolate chip cookie cake, with the pan of cake and a napkin next to it.
      Gluten Free Chocolate Chip Cookie Cake
    • A plate of flourless peanut butter cookies on a napkin.
      Flourless Peanut Butter Cookies
    • A cup of tea next to gluten free snickerdoodles.
      Gluten Free Snickerdoodles
    • A gluten free pumpkin square on a plate with ice cream and a fork.
      Gluten Free Brown Butter Pumpkin Squares
    5 from 2 votes (2 ratings without comment)

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    Welcome!

    Cucina Nicolina is your home for carefully tested gluten-free baking recipes made with simple, wholesome ingredients. I'm a writer, recipe developer, and cookbook author who loves to share all things yummy and gluten-free. Learn more about me.


    The cover of the cookbook Flourless: Recipes for Naturally Gluten-Free Desserts by Nicole Spiridakis shows an opera cake.

    My cookbook, Flourless, was published by Chronicle Books and is full of naturally gluten-free desserts to tempt everyone! Learn more.

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