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    Home » Recipes » Gluten Free Muffins & Scones

    Chocolate Chip Raspberry Muffins (Whole Grain Recipe with Gluten-Free Option!)

    Published: Jun 29, 2026 by Nicole Spiridakis

    Jump to Recipe Print Recipe

    Soft and tender muffins packed with bits of semisweet chocolate and sweet raspberries? Yes, please! These pretty - and pretty perfect - chocolate chip raspberry muffins are made with whole grain flour (your choice of gluten-free or not), fruit, and of course, chocolate!

    A chocolate chip raspberry muffin on a plate and a cup of coffee.

    These are the fluffiest, most flavorful muffins! Start with a base of whole grain flour (my forever-fav is gluten-free oat flour, but you do you) to create a super snackable muffin that's lovely at breakfast with coffee or later in the afternoon with a smear of butter!

    Raspberries and chocolate go so well with each other, right? Here, the sweet-tart raspberries marry with the semisweet chocolate to make a dessert-y muffin that everyone, from kids to adults, will love. Top them with - why not? - a spoonful of raspberry rhubarb jam.

    Then dive into my other fruit-y muffin recipes, like my fan-favorite oat flour blueberry muffins, oat flour raspberry muffins, or gluten free lemon blueberry muffins!

    Jump to:
    • Lots to Love
    • Ingredients needed
    • Variation Ideas/etc
    • step-by-step Instructions
    • Baking Tip: Fold in the Raspberries Gently
    • Tips & Recipe Notes
    • proper Storage
    • More Raspberry Recipes
    • Recipe

    Lots to Love

    Muffins are one of my go-to bakes when I'm just feeling like baking ... something ... so I have a million (give or take a few) iterations of a theme here on my website! These raspberry and chocolate-studded beauties are a wonderful addition to my repertoire. They are:

    • Made in one bowl. Like many of my muffin recipes, you'll need just one bowl to whip up the batter.
    • Full of wholesome ingredients. Nothing weird or complicated here, just the basics, which come together to form a delicious whole.
    • Very packable. For an on-the-go breakfast, lunch snack, or afternoon treat!
    • Easy to adapt. See my suggestions below! You can make these muffins dairy-free, gluten-free, or vegan.

    Ingredients needed

    Here's a look at what you'll need for these muffins before you get started. Make sure to check my recipe card at the end of this post for the full ingredient amounts and instructions!

    • Whole grain flour - You can use whole wheat or whole wheat pastry flour, or oat flour (my choice). Use brown rice flour if you can't eat oats.
    • Baking powder
    • Spices - I like ground cinnamon to complement the raspberries and chocolate, and ginger is also a nice choice.
    • Salt - Use fine sea salt or table salt.
    • Eggs - Use large or medium eggs.
    • Milk - I prefer whole milk; 2% also works. Use dairy-free milk if needed.
    • Granulated sugar
    • Butter - Unsalted butter, please! Or use non-dairy butter or melted coconut oil.
    • Raspberries - Fresh or frozen fruit is fine, just be careful folding them into the batter because raspberries are pretty delicate.
    • Chocolate chips - I like mini chocolate chips because they don't overwhelm the muffins with huge chunks of chocolate! If you have regular, that is fine, too.

    Variation Ideas/etc

    I always like to play around with a base recipe, and maybe you do, too. Here are a few ideas for how to incorporate some variations:

    • Orange zest - Chocolate and orange go so well together! Add the zest of 1 orange to the batter for a citrus boost.
    • Milk chocolate - For a richer muffin, swap the semisweet chocolate for milk chocolate chips.
    • Another fruit - Substitute chopped strawberries or blackberries for the raspberries for a flavor twist.
    • Vanilla - Stir in 1-2 teaspoons of pure vanilla extract for extra depth of flavor.
    Two halves of a chocolate chip raspberry muffin on a plate.

    step-by-step Instructions

    Here's how to make this easy recipe for chocolate chip raspberry muffins:

    1. Step 1: Whisk the try ingredients in a big bowl.
    1. Step 2: Add the rest of the ingredients then fold in the fruit and chocolate.
    1. Step 3: Portion batter into a greased muffin tin.
    1. Step 4: Bake for about 15-20 minutes at 375 F.

    Baking Tip: Fold in the Raspberries Gently

    Raspberries can be so delicate! Make sure to add them very, very gently to the batter so that they don't disintegrate. I use the folding technique, but really, you just want to use a super-gentle hand to incorporate them into the batter.

    Chocolate chip raspberry muffins and a cup of coffee.

    Tips & Recipe Notes

    • Use fresh or frozen berries. As noted above, you can use either fresh or frozen raspberries, with no need to defrost them first.
    • Grease the muffin tin well. Muffins that stick to the pan are a bummer! Be sure to really grease the muffin tin with oil or non-stick spray so the muffins will release easily. Or, of course, you can use muffin liners.
    • Cool briefly: Let the muffins cool 5 minutes in the tin, then turn them out to cool fully.
    • Make mini muffins. Grease or line a mini muffin tin and portion out the batter. You will need to bake the muffins a few minutes less if using a smaller size.
    • Sprinkle on some sugar. For a little extra sweetness, sprinkle granulated or brown sugar over the tops of the muffins before baking.
    • Make these vegan. Swap flax eggs or a mashed banana for the eggs, then use non-dairy milk or water, and oil or non-dairy butter.
    Half of a chocolate chip raspberry muffin on a plate.

    proper Storage

    Always cool muffins completely before storing; if you don't, they can get soggy in the container. Here's how to store these raspberry chocolate chip muffins:

    • Counter - Place muffins in an airtight container and store them on the counter for up to 4 days.
    • Fridge - Transfer the container to the fridge and store for up to 6 days.
    • Freezer - In a freezer-safe bag or container, keep in the freezer for up to 2 months. Thaw in the fridge before serving.

    More Raspberry Recipes

    • Gluten-free raspberry buckle
      Gluten-Free Raspberry Buckle
    • A slice of raspberry almond cake on a flowered plate.
      Gluten Free Raspberry Almond Cake
    • A sliced loaf of banana raspberry bread on a cutting board .with a cup of coffee
      Banana Raspberry Bread
    • Raspberry rhubarb jam on a spoon.
      Raspberry Rhubarb Jam

    If you tried this chocolate chip raspberry muffins recipe please let me know! Or if you have any recipe questions, always feel free to reach out in comments or email. I hope you love it! ❤️

    Recipe

    Two halves of a chocolate chip raspberry muffin on a plate.
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    Chocolate Chip Raspberry Muffins

    Nicole Spiridakis
    Soft and tender chocolate chip raspberry muffins are made with whole grain flour (easily gluten-free), fruit, and semisweet chocolate!
    No ratings yet
    Print Recipe Pin Recipe
    Prep Time 10 minutes mins
    Cook Time 20 minutes mins
    Total Time 30 minutes mins
    Course Breakfast
    Cuisine American
    Servings 12 muffins
    Calories 200 kcal

    Ingredients
     
     

    • 2 cups whole wheat flour , or oat flour (220 grams)
    • 3 teaspoons baking powder
    • 1 teaspoon ground cinnamon
    • ½ teaspoon fine sea salt
    • 2 eggs
    • 1 cup whole milk
    • ½ cup granulated sugar
    • ¼ cup unsalted butter , melted
    • 1 cup raspberries , fresh or frozen
    • ½ cup mini chocolate chips

    Instructions
     

    • Generously butter a muffin tin. Preheat the oven to 375℉.
    • In a large bowl, whisk together the 2 cups whole wheat flour, 3 teaspoons baking powder, 1 teaspoon ground cinnamon, and ½ teaspoon fine sea salt. Lightly whisk the 2 eggs separately, then stir in the beaten egg, 1 cup whole milk, ½ cup granulated sugar, and ¼ cup unsalted butter. Gently fold in the 1 cup raspberries and ½ cup mini chocolate chips.
    • Spoon the batter evenly into the muffin tin (fill each cup about two-thirds full). and let the batter rest for up to 20 minutes. Bake the muffins for 15-20 minutes, until a tester comes out clean.
    • Place the muffin tin on a wire rack to cool for about 10 minutes, then gently turn out the muffins onto the rack to cool completely.

    Notes

    • Use fresh or frozen berries. As noted above, you can use either fresh or frozen raspberries, with no need to defrost them first.
    • Grease the muffin tin well. Muffins that stick to the pan are a bummer! Be sure to really grease the muffin tin with oil or non-stick spray so the muffins will release easily. Or, of course, you can use muffin liners.
    • Cool briefly: Let the muffins cool 5 minutes in the tin, then turn them out to cool fully.
    • Make mini muffins. Grease or line a mini muffin tin and portion out the batter. You will need to bake the muffins a few minutes less if using a smaller size.
    • Sprinkle on some sugar. For a little extra sweetness, sprinkle granulated or brown sugar over the tops of the muffins before baking.
    • Make these vegan. Swap flax eggs or a mashed banana for the eggs, then use non-dairy milk or water, and oil or non-dairy butter.

    Nutrition

    Calories: 200kcalCarbohydrates: 30gProtein: 5gFat: 8gSaturated Fat: 4gPolyunsaturated Fat: 1gMonounsaturated Fat: 1gTrans Fat: 0.2gCholesterol: 41mgSodium: 227mgPotassium: 131mgFiber: 3gSugar: 15gVitamin A: 213IUVitamin C: 3mgCalcium: 109mgIron: 1mg
    Disclaimer: Nutrition information is automatically calculated and is an estimate (I'm not a nutritionist and can't guarantee accuracy!). Even when not specified, be sure to check that all the ingredients you use are gluten free if you need them to be by reading labels on all packaging and/or confirming with the manufacturer.
    Did you make this recipe?Let me know in the comments how it went!

    More Gluten Free Muffins & Scones

    • Oat flour rhubarb scones served on plates next to a tea pot.
      Oat Flour Rhubarb Scones
    • Five gluten free lemon blueberry muffins on a white napkin.
      Gluten Free Lemon Blueberry Muffins
    • Gluten free chocolate chip scones on a plate with a napkin.
      Gluten Free Chocolate Chip Scones (made with oat flour)
    • A bowl of gluten free apple banana bread muffins and a cup of coffee.
      Gluten Free Apple Banana Bread Muffins

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    A photo of Nicole Spiridakis

    Welcome!

    I'm Nicole, a writer, recipe developer, and cookbook author. I share carefully tested gluten-free baking recipes as well as the occasional vegetarian and vegan dish, all made with simple, wholesome ingredients. I believe in real food, lots of vegetables, and balance, too -- because I dearly love cake. Welcome! Learn more about me.


    The cover of the cookbook Flourless: Recipes for Naturally Gluten-Free Desserts by Nicole Spiridakis shows an opera cake.

    My cookbook, Flourless, was published by Chronicle Books and is full of naturally gluten-free desserts to tempt everyone! Learn more.

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