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    Home » Recipes » Gluten Free Muffins & Scones

    Gluten Free Berry Muffins (Whole Grain, Naturally Sweetened!)

    Modified: Apr 30, 2026 · Published: Sep 7, 2022 by Nicole Spiridakis

    Jump to Recipe Print Recipe

    These one-bowl gluten-free berry muffins are made with your choice of whole grain flour and are sweetened just with maple syrup! Use your favorite berries, a mix of fruit, or play around with add-ins - this is an easy, adaptable recipe.

    Blueberries, a plate of whole grain gluten free berry muffins, and a muffin with butter on a plate.

    Bake a batch of one-bowl muffins, and your morning routine instantly transforms into something a bit out of the ordinary. Even better if they're better-for-you, chock-full of berries, and sweetened with maple syrup.

    These gluten free berry muffins are a riff on my beloved oat flour blueberry muffins, with a few tweaks to make them a little lighter (I traded butter for oil, swapped in a natural sweetener, and added ground cinnamon for warmth). You can serve them plain, topped with a little swipe of lemon glaze or maple glaze, with butter, a little dollop of homemade lemon curd ... etc.

    Jump to:
    • What I Love About Gluten Free Berry Muffins
    • Ingredients Needed
    • Variation Ideas
    • Step-by-Step Instructions
    • Tips & Recipe Notes
    • Proper Storage
    • More Fruit Recipes
    • Recipe

    What I Love About Gluten Free Berry Muffins

    • They're adaptable. I love this recipe because it works with whatever I have on hand, either fresh or frozen. Make these into whole grain blueberry muffins, or do mixed berries, or add in a little rhubarb for a different version of gluten free rhubarb muffins.
    • The whole grains. I am a HUGE fan of adding whole grains into practically everything I can get away with. Gluten-free baking is actually a really easy way to up your whole grain intake because some of the best flours to use are naturally whole grain (like oat flour, sorghum flour, brown rice flour, teff flour - check out my chocolate teff cake, btw). In this recipe, you will use just one whole grain gluten-free flour of your choice.
    • Mix and match berries. A frozen mixed berry package is great here! So are the raspberries you just plucked off the backyard bushes, or the chopped strawberries from the u-pick.
    Ingredients for gluten free berry muffins are text-labeled.

    Ingredients Needed

    Here's what you need to make gluten free whole grain berry muffins. Make sure to scroll down to my recipe card at the bottom of this post for the full ingredient amounts and instructions!

    • Gluten free whole grain flour - I tend to use oat flour because I love it so, but any gluten-free whole grain flour will work great here. Try sorghum, brown rice, or oat flour by weight.
    • Baking powder
    • Cinnamon - For a hint of warmth. Swap ground ginger if you like.
    • Salt - I use fine sea salt, and table salt also works.
    • Egg - A large or medium egg is best.
    • Milk - Your choice of milk: Whole, 2%, or non-dairy milk to keep the muffins dairy-free.
    • Maple syrup - Or substitute brown sugar.
    • Oil - Try vegetable or canola oil, avocado oil, or coconut oil.
    • Berries - Fresh or frozen berries work interchangeably.

    Variation Ideas

    • Add nuts - For a bit of crunch, stir in ¼ cup of chopped walnuts.
    • Chocolate chips! My kids love these with chocolate, especially mini chocolate chips (I like ¼ cup of semisweet chocolate chips for extra sweetness).
    • Use any fruit - This is a great base that you can use with any fruit; it doesn't just have to be berries! One chopped apple or pear is lovely in the fall.
    • Add citrus zest - Zest 1 lemon or orange into the batter for a hint of citrus flavor.
    • Vegan - Use a flax egg and non-dairy milk to make these vegan.
    Blueberries scattered near a gluten free berry muffin.

    Step-by-Step Instructions

    Here's an overview in photos of how to make these gluten free berry muffins:

    Dry mix for gluten free berry muffins in a bowl.

    1. Whisk dry ingredients: In a large bowl, whisk together the dry ingredients.

    Eggs, sugar, and yogurt are whisked together in a bowl.

    2. Add wet ingredients: Now stir in the wet ingredients. Fold in the blueberries.

    Gluten free berry muffins batter in a muffin tin.

    3. Rest: Transfer the batter to a muffin tin and rest for 15 minutes.

    A muffin tin with baked gluten free berry muffins.

    4. Bake: Place in a 375F oven and bake for about 20 minutes.

    A bit of butter tops half of a gluten free berry muffin.

    Tips & Recipe Notes

    • Rest the batter. Whole-grain flour benefits from a rest before baking for a smoother, softer crumb. You can set a timer for 15 minutes, or let the batter rest while the oven preheats to help it hydrate.
    • Grease the muffin pan well. It's a good idea to very well grease the muffin tin to help the muffins release easily. Alternatively, use muffin liners.
    • Fill the muffin cups ⅔ full for this recipe.  While some muffin recipes advise filling the muffin cups to the brim, I've found that about ⅔ full is the sweet spot so that they rise nicely but don't overflow.
    • Try honey. Instead of maple syrup, use honey to sweeten the muffins.
    A plate of gluten free berry muffins and one on a plate.

    Proper Storage

    Make sure to always cool muffins completely before storing, otherwise they will get soggy.

    • Counter - Transfer to an airtight container and store on the counter for up to 3 days.
    • Fridge - The muffins will last, in an airtight container or bag, in the fridge for up to 5 days.
    • Freezer - Place muffins in a freezer-safe bag and store in the freezer for up to 3 months. Thaw in the fridge before serving.

    More Fruit Recipes

    • A sliced gluten free berry cake and a piece of cake on a plate.
      Gluten Free Berry Cake (with Maple Glaze)
    • A slice of gluten free strawberry loaf cake on a plate and slices in a serving dish.
      Gluten Free Strawberry Loaf Cake with Vanilla Glaze
    • A slice of gluten free grapefruit bread on a plate with a sliced loaf nearby/
      Gluten Free Olive Oil Grapefruit Cake
    • A gluten free Irish apple cake with a tea pot and cups of tea.
      Gluten Free Irish Apple Cake (Kerry Cake)

    Happy baking! If you make this whole grain gluten free berry muffins recipe, I'd love to know. Please leave a comment below, reach out with any questions, and tag me on Instagram @Cucina Nicolina  ❤️

    Recipe

    A white plate holds gluten free whole grain berry muffins.
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    Whole Grain Gluten Free Berry Muffins

    Nicole Spiridakis
    These one-bowl gluten-free berry muffins are made with your choice of whole grain flour and are sweetened just with maple syrup!
    No ratings yet
    Print Recipe Pin Recipe
    Prep Time 10 minutes mins
    Cook Time 20 minutes mins
    Total Time 30 minutes mins
    Course Breakfast
    Cuisine American
    Servings 12 muffins
    Calories 202 kcal

    Ingredients
     
     

    • 2 ½ cups oat flour (280 grams)
    • 3 teaspoons baking powder
    • 1 teaspoon ground cinnamon
    • ½ teaspoon fine sea salt
    • 1 large egg
    • 1 cup whole milk
    • ½ cup maple syrup , or brown sugar
    • ¼ cup oil
    • 1 cup berries , fresh or frozen

    Instructions
     

    • Generously butter a muffin tin. Preheat the oven to 375℉.
    • In a large bowl, whisk together the 2 ½ cups oat flour, 3 teaspoons baking powder, 1 teaspoon ground cinnamon, and ½ teaspoon fine sea salt. Lightly whisk the 1 large egg separately, then stir in the beaten egg, 1 cup whole milk, ½ cup maple syrup, and ¼ cup oil. Gently fold in the 1 cup berries.
    • Spoon the batter evenly into the muffin tin (fill each cup about two-thirds full). and let the batter rest for up to 20 minutes. Bake the muffins for 15-20 minutes, until a tester comes out clean.
    • Place the muffin tin on a wire rack to cool for about 10 minutes, then gently turn out the muffins onto the rack to cool completely.

    Notes

    • Rest the batter. Whole-grain flour benefits from a rest before baking for a smoother, softer crumb. You can set a timer for 15 minutes, or let the batter rest while the oven preheats to help it hydrate.
    • Grease the muffin pan well. It's a good idea to very well grease the muffin tin to help the muffins release easily. Alternatively, use muffin liners.
    • Fill the muffin cups ⅔ full for this recipe.  While some muffin recipes advise filling the muffin cups to the brim, I've found that about ⅔ full is the sweet spot so that they rise nicely but don't overflow.
    • Try honey. Instead of maple syrup, use honey to sweeten the muffins.

    Nutrition

    Calories: 202kcalCarbohydrates: 28gProtein: 5gFat: 8gSaturated Fat: 2gPolyunsaturated Fat: 4gMonounsaturated Fat: 2gTrans Fat: 0.03gCholesterol: 16mgSodium: 222mgPotassium: 166mgFiber: 2gSugar: 10gVitamin A: 59IUVitamin C: 0.3mgCalcium: 115mgIron: 1mg
    Disclaimer: Nutrition information is automatically calculated and is an estimate (I'm not a nutritionist and can't guarantee accuracy!). Even when not specified, be sure to check that all the ingredients you use are gluten free if you need them to be by reading labels on all packaging and/or confirming with the manufacturer.
    Did you make this recipe?Let me know in the comments how it went!

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    Comments

    1. Julie says

      March 27, 2026 at 2:47 pm

      5 stars
      I decided to try this recipe even though there weren’t many reviews, and I’m glad I did! I was looking for a whole grain, gluten free muffin without rice flour, and those recipes are hard to find. I did substitute 1/4 teaspoon cinnamon and 1/4 teaspoon nutmeg for the cardamom as suggested on Google since I didn’t have any. I like a lot of spice, so will probably use more next time. The batter was extremely watery and I wasn’t sure they would turn out, but I decided I’d gotten that far and I might as well bake them, and they turned out beautiful, so don’t be afraid if your batter seems watery. I didn’t have oat flour, so I put 140g of oats in my blender and used that. Thank you for sharing your recipe!

      Reply
      • Nicole Spiridakis says

        March 28, 2026 at 12:25 pm

        Hi Julie, I'm glad to hear this, thank you for letting me know! And it's a reminder that I should revisit and update this recipe :)

        Reply

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    A photo of Nicole Spiridakis

    Welcome!

    I'm Nicole, a writer, recipe developer, and cookbook author. I share carefully tested gluten-free baking recipes as well as the occasional vegetarian and vegan dish, all made with simple, wholesome ingredients. I believe in real food, lots of vegetables, and balance, too -- because I dearly love cake. Welcome! Learn more about me.


    The cover of the cookbook Flourless: Recipes for Naturally Gluten-Free Desserts by Nicole Spiridakis shows an opera cake.

    My cookbook, Flourless, was published by Chronicle Books and is full of naturally gluten-free desserts to tempt everyone! Learn more.

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