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    Home » Recipes » Gluten Free Muffins & Scones

    Gluten-Free Bakery Style Blueberry Muffins

    Modified: Jan 26, 2026 · Published: May 20, 2022 by Nicole Spiridakis

    Jump to Recipe Print Recipe

    These soft and cakey gluten-free bakery-style blueberry muffins are bursting with berries and topped with a brown sugar crumble. They perfectly straddle the line between cupcake and muffin - my favorite kind.

    A gluten-free bakery-style blueberry muffin on a plate with a blue napkin.

    You know the cakey blueberry muffins you'll often find in coffee shops and bakeries? This is my gluten-free take on those sweet little morsels. Oat and almond flour come together to create a soft-textured muffin that's topped with plenty of cinnamon-spiked brown sugar streusel.

    Unlike my oat flour blueberry muffins, these are especially soft, so it's a good idea to let them cool completely before eating. I also find that they firm up a bit on the second day, so if you prefer a slightly sturdier muffin, you'll love them even more the day after baking.

    Jump to:
    • Why These Gluten-Free Blueberry Muffins Work
    • What You'll Love
    • Ingredients Needed
    • Variation Ideas
    • Step-by-Step Instructions
    • Tips & Recipe Notes
    • Proper Storage
    • More Gluten Free Blueberry Recipes
    • Recipe

    Why These Gluten-Free Blueberry Muffins Work

    Instead of a gluten-free flour blend, these muffins use a combination of oat and almond flours. Oat flour provides structure and that classic, cakey bakery crumb, while almond flour brings moisture and richness, helping the muffins stay soft without getting gritty or gummy. I lean into single-origin flours in most of my gluten-free baking because they're more flavorful and I have complete control over what I'm including.

    What You'll Love

    I mean, what's NOT to love about gluten-free blueberry muffins! :) These are special because:

    • They feel like a treat. I don't always want healthy - sometimes my morning cuppa comes after a hectic morning, and I need a little something extra. These muffins more than fit the bill.
    • Moist and flavorful. Don't forget the cinnamon! It perfectly balances the juicy pop of the blueberries. And this lovely texture is to die for!
    • Worthy of the bakery case. Pretty and a bit out of the ordinary, these muffins are just as good as anything you'd find in a bakery. Plus, they're naturally gluten-free!
    The ingredients for gluten-free bakery-style blueberry muffins are text-labeled.

    Ingredients Needed

    Here's a look at what you'll need for these muffins. Make sure to scroll down to my recipe card at the bottom of this post for the full ingredient amounts and instructions!

    • Butter - Unsalted butter is best here. If you need to use salted butter, reduce the amount of added salt.
    • Granulated sugar
    • Eggs - I used large eggs, and medium eggs also work.
    • Milk - Either whole milk or 2% milk is fine.
    • Oat flour - You can pick up a package of oat flour at the store or learn how to make oat flour. If you don't eat oats, try brown rice flour or sorghum flour. You'll use it in the batter and for the topping.
    • Almond flour - Fine-ground almond flour, rather than coarser almond meal, adds structure and moisture to the muffins.
    • Baking powder
    • Salt - I used fine sea salt, and table salt is fine, too.
    • Blueberries - Either fresh or frozen blueberries work (no need to defrost frozen berries).
    • Cinnamon
    • Brown sugar - Light or dark brown sugar works.

    Variation Ideas

    • Other fruit - Use the muffin batter base for other berries, like raspberries, strawberries, or blackberries!
    • Dairy-free - Swap the butter and milk for your favorite non-dairy versions (or try melted coconut oil for the butter).
    • Add nuts - For a bit of crunch, add ½ cup of chopped walnuts.
    • Citrus zest - Stir in the zest of 1 lemon or orange for a hint of sweet citrus flavor.
    A plate of bakery-style blueberry muffins next to a wooden board.

    Step-by-Step Instructions

    Here's an overview in photos of how to make gluten free bakery-style blueberry muffins:

    The batter for gluten-free bakery-style blueberry muffins in a bowl.

    1. Make batter: Mix all of the batter ingredients together and fold in the berries. It will be thick!

    The crumble topping is mixed in a bowl for gluten-free bakery-style blueberry muffins.

    2. Make topping: Mix the topping together in a bowl.

    Batter for gluten-free bakery-style blueberry muffins in a muffin tin.

    3. Assemble: Portion the batter into a well-greased muffin tin and add the topping evenly. Rest for 20 minutes.

    Gluten free bakery-style blueberry muffins cool in the muffin pan.

    4. Bake: Place in a 375F oven and bake for about 25 minutes.

    A gluten-free bakery-style blueberry muffin split in half on a plate next to a plate of muffins.

    Tips & Recipe Notes

    • Grease the muffin tin well. These are soft, did I mention that?! So make sure to really grease the muffin tin with oil or non-stick spray so that the muffins release easily. Or, use muffin liners.
    • Toss berries in flour. Make sure to follow the recipe instructions to toss the blueberries in a few teaspoons of the dry mixture. This will help prevent them from sinking to the bottom.
    • Don't substitute for a mix. I know it seems easier, but you'll truly love the texture that comes from the oat and almond flours. If you must, though, give my homemade gluten free flour blend a try.
    • Cool completely. As noted, these muffins are very soft straight out of the oven. Let them cool fully so that the crumb sets.
    • Make ahead. For a firmer texture, bake the muffins the night before you plan to serve them and store them in an airtight container on the counter.

    Proper Storage

    Muffins always need to be cooled really well so that they don't get soggy in the storage container. Cool completely to room temperature before storing.

    • Counter - Place muffins in an airtight container and store them on the counter for up to 3 days.
    • Fridge - Place the container in the fridge for up to 5 days.
    • Freezer - Transfer muffins to a freezer-safe bag or container and store in the freezer for up to 3 months. Thaw in the fridge before serving.

    More Gluten Free Blueberry Recipes

    • A plate of four gluten free blueberry scones.
      Gluten Free Blueberry Scones with Lemon
    • Slices of gluten free blueberry banana bread surrounded by blueberries.
      Gluten Free Blueberry Banana Bread
    • A slice of gluten free blueberry bread is served on a white plate with the loaf in the background.
      Gluten Free Blueberry Bread
    • A piece of blueberry coffee cake on a plate.
      Gluten Free Blueberry Coffee Cake

    Happy baking! If you make this gluten-free bakery-style blueberry muffins recipe, I'd love to know. Please leave a comment below, reach out with any questions, and tag me on Instagram @Cucina Nicolina  ❤️

    Recipe

    Gluten-free bakery-style blueberry muffins with blueberries scattered around them.
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    Gluten-Free Bakery-Style Blueberry Muffins

    Nicole Spiridakis
    These soft and cakey gluten-free bakery-style blueberry muffins are bursting with berries and topped with a brown sugar crumble.
    No ratings yet
    Print Recipe Pin Recipe
    Prep Time 10 minutes mins
    Cook Time 25 minutes mins
    Total Time 35 minutes mins
    Course Breakfast
    Cuisine American
    Servings 12 muffins
    Calories 318 kcal

    Ingredients
     
     

    • ½ cup unsalted butter melted
    • 1 cup granulated sugar
    • 2 large eggs at room temperature
    • ½ cup whole milk
    • 1 ½ cups oat flour (180 grams)
    • ½ cup almond flour (60 grams)
    • 2 teaspoons baking powder
    • ¼ teaspoon fine sea salt
    • 2 cups fresh or frozen blueberries

    Topping

    • ½ cup oat flour (60 grams)
    • ½ teaspoon ground cinnamon
    • ⅓ cup brown sugar light or dark brown sugar
    • 3 tablespoons unsalted butter melted

    Instructions
     

    • In a large bowl, whisk or beat together the melted ½ cup unsalted butter and 1 cup granulated sugar. Slowly mix in the 2 large eggs, then stir in the ½ cup whole milk. Fold in the dry ingredients, mixing with a wooden spoon until just combined.
    • In a medium bowl, whisk together the 1 ½ cups oat flour, ½ cup almond flour , 2 teaspoons baking powder, and ¼ teaspoon fine sea salt. Reserve 2 tablespoons of this mixture, then stir the remaining dry ingredient mixture into the butter mixture.
    • Toss the 2 cups fresh or frozen blueberries and 2 tablespoons of flour mix in a medium bowl, then gently fold the blueberries into the batter.
    • Divide the batter evenly between the muffin cups and let the batter rest. Preheat the oven to 375℉.
    • Prepare the topping: In a small bowl, whisk together the ½ cup oat flour, ½ teaspoon ground cinnamon, and ⅓ cup brown sugar, then stir in the 3 tablespoons unsalted butter with a fork until crumbly. Sprinkle the topping evenly over the muffins.
    • Place in the oven and bake for 25 minutes or until a tester inserted in the middle of a muffins comes out clean. Remove from the oven and cool the muffins for 5 minutes in the pan before removing to a rack to cool completely.

    Notes

    • Grease the muffin tin well. These are soft, did I mention that?! So make sure to really grease the muffin tin with oil or non-stick spray so that the muffins release easily. Or, use muffin liners.
    • Toss berries in flour. Make sure to follow the recipe instructions to toss the blueberries in a few teaspoons of the dry mixture. This will help prevent them from sinking to the bottom.
    • Don't substitute for a mix. I know it seems easier, but you'll truly love the texture that comes from the oat and almond flours. If you must, though, give my homemade gluten free flour blend a try.
    • Cool completely. As noted, these muffins are very soft straight out of the oven. Let them cool fully so that the crumb sets.
    • Make ahead. For a firmer texture, bake the muffins the night before you plan to serve them and store them in an airtight container on the counter.

    Nutrition

    Calories: 318kcalCarbohydrates: 41gProtein: 5gFat: 16gSaturated Fat: 8gPolyunsaturated Fat: 1gMonounsaturated Fat: 4gTrans Fat: 0.4gCholesterol: 61mgSodium: 132mgPotassium: 124mgFiber: 2gSugar: 26gVitamin A: 397IUVitamin C: 2mgCalcium: 87mgIron: 1mg
    Disclaimer: Nutrition information is automatically calculated and is an estimate (I'm not a nutritionist and can't guarantee accuracy!). Even when not specified, be sure to check that all the ingredients you use are gluten free if you need them to be by reading labels on all packaging and/or confirming with the manufacturer.
    Did you make this recipe?Let me know in the comments how it went!

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    Welcome!

    Cucina Nicolina is your home for carefully tested gluten-free baking recipes made with simple, wholesome ingredients. I'm a writer, recipe developer, and cookbook author who loves to share all things yummy and gluten-free. Learn more about me.


    The cover of the cookbook Flourless: Recipes for Naturally Gluten-Free Desserts by Nicole Spiridakis shows an opera cake.

    My cookbook, Flourless, was published by Chronicle Books and is full of naturally gluten-free desserts to tempt everyone! Learn more.

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